{
  "_id": "6a200e23b401979e734480d1",
  "Package": "iDOS",
  "Type": "Package",
  "Title": "Integrated Discovery of Oncogenic Signatures",
  "Version": "1.0.1",
  "Date": "2024-03-09",
  "Authors@R": "c(\nperson(\"Syed\", \"Haider\", role = c(\"aut\", \"cre\"), email = \"Syed.Haider@icr.ac.uk\"),\nperson(\"Francesca\", \"Buffa\", role = \"aut\")\n)",
  "Author": "Syed Haider [aut, cre], Francesca Buffa [aut]",
  "Maintainer": "Syed Haider <Syed.Haider@icr.ac.uk>",
  "Description": "A method to integrate molecular profiles of cancer\npatients (gene copy number and mRNA abundance) to identify\ncandidate gain of function alterations. These candidate\nalterations can be subsequently further tested to discover\ncancer driver alterations. Briefly, this method tests of\ngenomic correlates of mRNA dysregulation and prioritise those\nwhere DNA gains/amplifications are associated with elevated\nmRNA expression of the same gene. For details see, Haider S et\nal. (2016) \"Genomic alterations underlie a pan-cancer metabolic\nshift associated with tumour hypoxia\", Genome Biology,\n<https://pubmed.ncbi.nlm.nih.gov/27358048/>.",
  "License": "GPL-2",
  "LazyLoad": "yes",
  "RoxygenNote": "7.2.3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-03 11:18:09 UTC",
    "User": "root"
  },
  "Repository": "https://syedhaider5.r-universe.dev",
  "Date/Publication": "2024-03-12 02:31:06 UTC",
  "RemoteUrl": "https://github.com/cran/iDOS",
  "RemoteRef": "HEAD",
  "RemoteSha": "40b5f76f638781812b7c3f47247bd3af6859e9f5",
  "MD5sum": "6522411fff974d8a00cd9d2a0e7e4b71",
  "_user": "syedhaider5",
  "_type": "src",
  "_file": "iDOS_1.0.1.tar.gz",
  "_fileid": "65b413169ca433598a89c7c33b8f0d196653870117c1ae9aafe18c94ccd82cfa",
  "_filesize": 140506,
  "_sha256": "65b413169ca433598a89c7c33b8f0d196653870117c1ae9aafe18c94ccd82cfa",
  "_created": "2026-06-03T11:18:09.000Z",
  "_published": "2026-06-03T11:21:07.510Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79281736875,
      "time": 100,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7383109788"
    },
    {
      "job": 79281736693,
      "time": 101,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7383109879"
    },
    {
      "job": 79281736895,
      "time": 141,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7383112576"
    },
    {
      "job": 79281736785,
      "time": 144,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7383112030"
    },
    {
      "job": 79281341580,
      "time": 144,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7383075740"
    },
    {
      "job": 79281736706,
      "time": 105,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7383110987"
    },
    {
      "job": 79281736779,
      "time": 69,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7383099445"
    },
    {
      "job": 79281736863,
      "time": 68,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7383099065"
    },
    {
      "job": 79281736762,
      "time": 62,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7383096968"
    }
  ],
  "_buildurl": "https://github.com/r-universe/syedhaider5/actions/runs/26881164666",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/iDOS",
  "_commit": {
    "id": "40b5f76f638781812b7c3f47247bd3af6859e9f5",
    "author": "Syed Haider <Syed.Haider@icr.ac.uk>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.1\n",
    "time": 1710210666
  },
  "_maintainer": {
    "name": "Syed Haider",
    "email": "syed.haider@icr.ac.uk",
    "login": "syedhaider5",
    "description": "",
    "uuid": 85567523
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.6.0",
      "role": "Depends"
    },
    {
      "package": "VennDiagram",
      "version": ">= 1.6.5",
      "role": "Depends"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "syedhaider5",
      "count": 1,
      "uuid": 85567523
    }
  ],
  "_userbio": {
    "uuid": 85567523,
    "type": "user",
    "name": "SyedHaider5"
  },
  "_downloads": {
    "count": 141,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/iDOS"
  },
  "_searchresults": 10,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/iDOS.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "syedhaider5",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2016-07-27"
    },
    {
      "version": "1.0.1",
      "date": "2024-03-11"
    }
  ],
  "_exports": [
    "create.counts.table",
    "create.training.validation.split",
    "estimate.expression.cna.correlation",
    "estimate.null.distribution.correlation",
    "find.DE.features",
    "get.program.defaults",
    "get.test.data",
    "get.top.features",
    "load.datasets"
  ],
  "_help": [
    {
      "page": "create.counts.table",
      "title": "create.counts.table",
      "topics": [
        "create.counts.table"
      ]
    },
    {
      "page": "create.training.validation.split",
      "title": "create.training.validation.split",
      "topics": [
        "create.training.validation.split"
      ]
    },
    {
      "page": "estimate.expression.cna.correlation",
      "title": "estimate.expression.cna.correlation",
      "topics": [
        "estimate.expression.cna.correlation"
      ]
    },
    {
      "page": "estimate.null.distribution.correlation",
      "title": "estimate.null.distribution.correlation",
      "topics": [
        "estimate.null.distribution.correlation"
      ]
    },
    {
      "page": "find.DE.features",
      "title": "find.DE.features",
      "topics": [
        "find.DE.features"
      ]
    },
    {
      "page": "get.program.defaults",
      "title": "get.program.defaults",
      "topics": [
        "get.program.defaults"
      ]
    },
    {
      "page": "get.test.data",
      "title": "get.test.data",
      "topics": [
        "get.test.data"
      ]
    },
    {
      "page": "get.top.features",
      "title": "get.top.features",
      "topics": [
        "get.top.features"
      ]
    },
    {
      "page": "load.datasets",
      "title": "load.datasets",
      "topics": [
        "load.datasets"
      ]
    }
  ],
  "_rundeps": [
    "formatR",
    "futile.logger",
    "futile.options",
    "lambda.r",
    "VennDiagram"
  ],
  "_score": 1,
  "_indexed": true,
  "_nocasepkg": "idos",
  "_universes": [
    "syedhaider5"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-06-03T11:19:55.000Z",
      "distro": "noble",
      "commit": "40b5f76f638781812b7c3f47247bd3af6859e9f5",
      "fileid": "95a58f2b9611a5c39eb195544855e8c3f6725eb74ba05b82daf9177f13d2b809",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/syedhaider5/actions/runs/26881164666"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.1",
      "date": "2026-06-03T11:19:54.000Z",
      "distro": "noble",
      "commit": "40b5f76f638781812b7c3f47247bd3af6859e9f5",
      "fileid": "846990062716bcb95e7b072688be8f53f656909a1131897e86f0d26707b4892c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/syedhaider5/actions/runs/26881164666"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-06-03T11:20:06.000Z",
      "commit": "40b5f76f638781812b7c3f47247bd3af6859e9f5",
      "fileid": "9e83e032ea9822ff0d40e63425672334ed396b7f65f0d1bfec4654e38bd4d4f0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/syedhaider5/actions/runs/26881164666"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.1",
      "date": "2026-06-03T11:20:03.000Z",
      "commit": "40b5f76f638781812b7c3f47247bd3af6859e9f5",
      "fileid": "482d227c52529d70a2419e6faeb5a30a02dbe168bb971245faf7913bc4555a10",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/syedhaider5/actions/runs/26881164666"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.1",
      "date": "2026-06-03T11:20:07.000Z",
      "commit": "40b5f76f638781812b7c3f47247bd3af6859e9f5",
      "fileid": "5bd108195a3a78e6e06aeffed6c52156da7e33e9ca50896cb65951c5853379b5",
      "status": "success",
      "buildurl": "https://github.com/r-universe/syedhaider5/actions/runs/26881164666"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-06-03T11:19:21.000Z",
      "commit": "40b5f76f638781812b7c3f47247bd3af6859e9f5",
      "fileid": "c6bb6db88d0fd2f99fafcb81c9bfa4e46f1e52d6d56e7c38345cfa76c0460028",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/syedhaider5/actions/runs/26881164666"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-06-03T11:19:16.000Z",
      "commit": "40b5f76f638781812b7c3f47247bd3af6859e9f5",
      "fileid": "bccf5518630020567c6ce8435109c388708c8b0b44a6ca69ccc766e8d0cd7bb8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/syedhaider5/actions/runs/26881164666"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.1",
      "date": "2026-06-03T11:19:11.000Z",
      "commit": "40b5f76f638781812b7c3f47247bd3af6859e9f5",
      "fileid": "1c5de376336c80804658e943a314de979d60be0a49ff346ca8ae4534d495d961",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/syedhaider5/actions/runs/26881164666"
    }
  ]
}