Single restriction fragment | Longer bait regions

Background | Quickstart | Pre-processing data | Statistical model | Distribution of the counts | Negative binomial | Poisson | Truncated negative binomial | Truncated poisson | Adjusting for covariates | Custom covariates | Filtering baits and targets | Merging biological replicates | Assessing model fits | Setting distance bins | Multiple testing correction | Interpretation of interaction peaks | Annotation with bedtools | Visualising interaction peaks in WashU Epigenome Browser | Locus plots | Background Interactions | Example Workflow (T-47D breast cancer cell line) | Session Info | Acknowledgements | References

Subnetwork Integration for Multi-modal Signatures (SIMMS) | Author(s): Syed Haider, Paul C. Boutros | Maintainer: Syed Haider ([email protected]) | Dated: r Sys.Date() | Table of Contents | Overview | Networks database | Molecular profiles and clinical data | Example R-script | Output | output/ | graphs/